Skip to content

Add basic scATAC signac processing to cell-seek #2

@tovahmarkowitz

Description

@tovahmarkowitz

Write scripts that will:

  • Start with cellranger output from cell-seek for scATAC data
  • Use scRNA scripts from cell-seek as a template
  • Incorporate scATAC-specific processing steps including peak annotation, motif annotation, and pseudo-expression calculations.
  • Identify appropriate reference packages for GRCh38-2020, GRCh38-2024, mm10-2020, GRCm39-2024
  • Create merged object across multiple samples and repeat all steps

Metadata

Metadata

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions