From b0f8ea7ac9755b17f3f71e36ec50903cb7e0c006 Mon Sep 17 00:00:00 2001
From: eecavanna <eecavanna@users.noreply.github.com>
Date: Thu, 18 Sep 2025 20:49:59 -0700
Subject: [PATCH 1/3] Update MONet parsing to be consistent with updated source
 data format

---
 docs/map/index.html | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/docs/map/index.html b/docs/map/index.html
index 5031021..42450ca 100644
--- a/docs/map/index.html
+++ b/docs/map/index.html
@@ -327,7 +327,7 @@
         });
         console.debug(`Created ${jgiGoldOrgObjs.length} markers.`);
 
-        // Fetch the EMSL MONet JSON (not CSV) file and create a marker for each element of its top-level array.
+        // Fetch the EMSL MONet JSON (not CSV) file and create a marker for each BERtron entity represented within it.
         const monetResponse = await fetch(
           `${baseUrlForData}/emsl/map/monet_samples_schema-9-16-2025.json`,
         );
@@ -335,9 +335,10 @@
         const monetMarkers = [];
         console.debug("Fetching and parsing finished.", { data: monetObjs });
         monetObjs.forEach((obj) => {
-          const latLon = getLatLon(obj);
-          const identifier = `Project: ${obj["proposal_id"]}, Sampling set: ${obj["sampling_set"]}`;
-          const url = `https://sc-data.emsl.pnnl.gov/?projectId=${obj["proposal_id"]}`;
+          const coordinates = obj["coordinates"];
+          const latLon = getLatLon(coordinates);
+          const identifier = obj["id"];
+          const url = obj["uri"];
           const popupHtml = `<div class="vstack gap-3 marker-popup"><img src="./img/emsl-100x100.png" alt="Logo"/><div>EMSL MONet Sample<br/><a href="${url}" target="_blank" title="View project" class="identifier">${identifier}</a></div></div>`;
           const icon = L.icon({
             iconUrl: "./img/emsl-marker.png",

From 845659b7507d5c7e3015237169f8dba79f206ec0 Mon Sep 17 00:00:00 2001
From: eecavanna <eecavanna@users.noreply.github.com>
Date: Thu, 18 Sep 2025 21:06:02 -0700
Subject: [PATCH 2/3] Update map web page to handle absent `coordinates` and
 `id` fields

---
 docs/map/index.html | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/docs/map/index.html b/docs/map/index.html
index 42450ca..8ad460f 100644
--- a/docs/map/index.html
+++ b/docs/map/index.html
@@ -335,9 +335,21 @@
         const monetMarkers = [];
         console.debug("Fetching and parsing finished.", { data: monetObjs });
         monetObjs.forEach((obj) => {
+          // If the object lacks a `coordinates` field (which the BERtron schema says is possible),
+          // omit it from the map and display a warning on the console.
+          if (!obj.hasOwnProperty("coordinates")) {
+            console.warn("Omitting object lacking coordinates:", obj);
+            return; // skips to the next iteration
+          }
+
+          // If the object lacks an `id` field (which the BERtron schema says is possible),
+          // use a generic value.
+          const identifier = obj.hasOwnProperty("id") ? obj["id"] : "Sample";
+
+          // At this point, we know the object has a `coordinates` field, so we access it.
           const coordinates = obj["coordinates"];
           const latLon = getLatLon(coordinates);
-          const identifier = obj["id"];
+
           const url = obj["uri"];
           const popupHtml = `<div class="vstack gap-3 marker-popup"><img src="./img/emsl-100x100.png" alt="Logo"/><div>EMSL MONet Sample<br/><a href="${url}" target="_blank" title="View project" class="identifier">${identifier}</a></div></div>`;
           const icon = L.icon({

From 37c2aec37791b59d42ecc41b536b57be775b2d01 Mon Sep 17 00:00:00 2001
From: eecavanna <eecavanna@users.noreply.github.com>
Date: Thu, 18 Sep 2025 21:08:29 -0700
Subject: [PATCH 3/3] Clarify comment

---
 docs/map/index.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/map/index.html b/docs/map/index.html
index 8ad460f..f21f9d2 100644
--- a/docs/map/index.html
+++ b/docs/map/index.html
@@ -336,7 +336,7 @@
         console.debug("Fetching and parsing finished.", { data: monetObjs });
         monetObjs.forEach((obj) => {
           // If the object lacks a `coordinates` field (which the BERtron schema says is possible),
-          // omit it from the map and display a warning on the console.
+          // omit the object from the map and display a warning on the JavaScript console.
           if (!obj.hasOwnProperty("coordinates")) {
             console.warn("Omitting object lacking coordinates:", obj);
             return; // skips to the next iteration