From 7056bdfa5fa442fa06dfdf8a6754ee42b7e0a4fb Mon Sep 17 00:00:00 2001
From: Jeremy Kubica <104161096+jeremykubica@users.noreply.github.com>
Date: Mon, 5 Jan 2026 08:28:36 -0500
Subject: [PATCH 1/2] Upgrade action versions

---
 .../.github/workflows/pre-commit-ci.yml.jinja               | 4 ++--
 .../.github/workflows/publish-to-pypi.yml.jinja             | 2 +-
 .../.github/workflows/smoke-test.yml.jinja                  | 2 +-
 .../.github/workflows/testing-and-coverage.yml.jinja        | 6 +++---
 ...{% if include_benchmarks %}asv-main.yml{% endif %}.jinja | 2 +-
 ...if include_benchmarks %}asv-nightly.yml{% endif %}.jinja | 6 +++---
 .../{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja  | 4 ++--
 ..._benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja | 2 +-
 ... include_docs %}build-documentation.yml{% endif %}.jinja | 2 +-
 9 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/python-project-template/.github/workflows/pre-commit-ci.yml.jinja b/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
index 32e5d88..80ee0f4 100644
--- a/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
+++ b/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
@@ -14,7 +14,7 @@ jobs:
   pre-commit-ci:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0 
     - name: Set up Python
@@ -22,7 +22,7 @@ jobs:
       with:
         python-version: '{{ py.pref(python_versions) }}'
     - name: Install uv
-      uses: astral-sh/setup-uv@v5
+      uses: astral-sh/setup-uv@v7
     - name: Install dependencies
       run: |
         sudo apt-get update
diff --git a/python-project-template/.github/workflows/publish-to-pypi.yml.jinja b/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
index fec3125..6f37386 100644
--- a/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
+++ b/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
@@ -23,7 +23,7 @@ jobs:
     permissions:
       id-token: write
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
diff --git a/python-project-template/.github/workflows/smoke-test.yml.jinja b/python-project-template/.github/workflows/smoke-test.yml.jinja
index 0a2a877..036ad77 100644
--- a/python-project-template/.github/workflows/smoke-test.yml.jinja
+++ b/python-project-template/.github/workflows/smoke-test.yml.jinja
@@ -23,7 +23,7 @@ jobs:
         python-version: {{ python_versions }}
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python {% raw %}${{ matrix.python-version }}{% endraw %}
       uses: actions/setup-python@v5
       with:
diff --git a/python-project-template/.github/workflows/testing-and-coverage.yml.jinja b/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
index 16b4361..41c5cdd 100644
--- a/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
+++ b/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
@@ -19,13 +19,13 @@ jobs:
         python-version: {{ python_versions }}
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python {% raw %}${{ matrix.python-version }}{% endraw %}
       uses: actions/setup-python@v5
       with:
         python-version: {% raw %}${{ matrix.python-version }}{% endraw %}
     - name: Install uv
-      uses: astral-sh/setup-uv@v5
+      uses: astral-sh/setup-uv@v7
     - name: Install dependencies
       run: |
         sudo apt-get update
@@ -42,7 +42,7 @@ jobs:
   test-lowest-versions:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python {{ py.min(python_versions)  }}
       uses: actions/setup-python@v5
       with:
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja
index a7fd5cd..da377a7 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja	
@@ -34,7 +34,7 @@ jobs:
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout main branch of the repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Install dependencies
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja
index 75acbed..5118997 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja	
@@ -30,7 +30,7 @@ jobs:
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout main branch of the repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Install dependencies
@@ -55,7 +55,7 @@ jobs:
         echo "yesterday=$(date -d yesterday +'%Y-%m-%d')" >> $GITHUB_OUTPUT
         echo "today=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
     - name: Use last nightly commit hash from cache
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       with:
         path: ${{env.WORKING_DIR}}
         key: nightly-results-${{steps.nightly-dates.outputs.yesterday}}
@@ -70,7 +70,7 @@ jobs:
         fi
         echo $CURRENT_HASH > $HASH_FILE
     - name: Update last nightly hash in cache
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       with:
         path: ${{env.WORKING_DIR}}
         key: nightly-results-${{steps.nightly-dates.outputs.today}}
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja
index 4d83f3a..3aabfb7 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja	
@@ -36,7 +36,7 @@ jobs:
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout PR branch of the repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         fetch-depth: 0
     - name: Display Workflow Run Information
@@ -68,7 +68,7 @@ jobs:
       env:
         STEP_URL: ${{steps.jobs.outputs.html_url}}#step:10:1
     - name: Upload artifacts (PR number and benchmarks output)
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v6
       with:
         name: benchmark-artifacts
         path: ${{env.ARTIFACTS_DIR}}
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja
index 1dce6ea..7177938 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja	
@@ -28,7 +28,7 @@ jobs:
         echo "Conclusion: ${{ github.event.workflow_run.conclusion }}"
         echo "Event: ${{ github.event.workflow_run.event }}"
     - name: Download artifact
-      uses: dawidd6/action-download-artifact@v7
+      uses: dawidd6/action-download-artifact@v12
       with:
         name: benchmark-artifacts
         run_id: ${{ github.event.workflow_run.id }}
diff --git a/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja
index 1f628d6..9ec10c2 100644
--- a/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja	
@@ -20,7 +20,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
     - name: Set up Python {{ py.pref(python_versions) }}
       uses: actions/setup-python@v5
       with:

From da9c51c916f32931ba97d587ed22bd31dd10a6fd Mon Sep 17 00:00:00 2001
From: Jeremy Kubica <104161096+jeremykubica@users.noreply.github.com>
Date: Mon, 5 Jan 2026 08:36:21 -0500
Subject: [PATCH 2/2] More updates

---
 .../.github/workflows/pre-commit-ci.yml.jinja                 | 2 +-
 .../.github/workflows/publish-to-pypi.yml.jinja               | 2 +-
 .../.github/workflows/smoke-test.yml.jinja                    | 4 ++--
 .../.github/workflows/testing-and-coverage.yml.jinja          | 4 ++--
 .../{% if include_benchmarks %}asv-main.yml{% endif %}.jinja  | 2 +-
 ...% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja | 2 +-
 .../{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja    | 2 +-
 ...de_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja | 4 ++--
 ...if include_docs %}build-documentation.yml{% endif %}.jinja | 2 +-
 9 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/python-project-template/.github/workflows/pre-commit-ci.yml.jinja b/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
index 80ee0f4..44037b9 100644
--- a/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
+++ b/python-project-template/.github/workflows/pre-commit-ci.yml.jinja
@@ -18,7 +18,7 @@ jobs:
       with:
         fetch-depth: 0 
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: '{{ py.pref(python_versions) }}'
     - name: Install uv
diff --git a/python-project-template/.github/workflows/publish-to-pypi.yml.jinja b/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
index 6f37386..c82551f 100644
--- a/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
+++ b/python-project-template/.github/workflows/publish-to-pypi.yml.jinja
@@ -25,7 +25,7 @@ jobs:
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: '{{ py.pref(python_versions) }}'
     - name: Install dependencies
diff --git a/python-project-template/.github/workflows/smoke-test.yml.jinja b/python-project-template/.github/workflows/smoke-test.yml.jinja
index 036ad77..2abad9f 100644
--- a/python-project-template/.github/workflows/smoke-test.yml.jinja
+++ b/python-project-template/.github/workflows/smoke-test.yml.jinja
@@ -25,11 +25,11 @@ jobs:
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python {% raw %}${{ matrix.python-version }}{% endraw %}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: {% raw %}${{ matrix.python-version }}{% endraw %}
     - name: Install uv
-      uses: astral-sh/setup-uv@v5
+      uses: astral-sh/setup-uv@v7
     - name: Install dependencies
       run: |
         sudo apt-get update
diff --git a/python-project-template/.github/workflows/testing-and-coverage.yml.jinja b/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
index 41c5cdd..307ec5d 100644
--- a/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
+++ b/python-project-template/.github/workflows/testing-and-coverage.yml.jinja
@@ -21,7 +21,7 @@ jobs:
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python {% raw %}${{ matrix.python-version }}{% endraw %}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: {% raw %}${{ matrix.python-version }}{% endraw %}
     - name: Install uv
@@ -44,7 +44,7 @@ jobs:
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python {{ py.min(python_versions)  }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: '{{ py.min(python_versions)  }}'
     - name: Install dependencies
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja
index da377a7..8ec60be 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-main.yml{% endif %}.jinja	
@@ -30,7 +30,7 @@ jobs:
         working-directory: ${{env.WORKING_DIR}}
     steps:
     - name: Set up Python ${{env.PYTHON_VERSION}}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout main branch of the repository
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja
index 5118997..c8976f0 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-nightly.yml{% endif %}.jinja	
@@ -26,7 +26,7 @@ jobs:
         working-directory: ${{env.WORKING_DIR}}
     steps:
     - name: Set up Python ${{env.PYTHON_VERSION}}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout main branch of the repository
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja
index 3aabfb7..b8c40d2 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}asv-pr.yml{% endif %}.jinja	
@@ -32,7 +32,7 @@ jobs:
         working-directory: ${{env.WORKING_DIR}}
     steps:
     - name: Set up Python ${{env.PYTHON_VERSION}}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: ${{env.PYTHON_VERSION}}
     - name: Checkout PR branch of the repository
diff --git a/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja
index 7177938..6ecc353 100644
--- a/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_benchmarks %}publish-benchmarks-pr.yml{% endif %}.jinja	
@@ -39,14 +39,14 @@ jobs:
         printf "Output:\n$(cat output)"
         printf "pr=$(cat pr)" >> $GITHUB_OUTPUT
     - name: Find benchmarks comment
-      uses: peter-evans/find-comment@v3
+      uses: peter-evans/find-comment@v4
       id: find-comment
       with:
         issue-number: ${{ steps.pr-info.outputs.pr }}
         comment-author: 'github-actions[bot]'
         body-includes: view all benchmarks
     - name: Create or update benchmarks comment
-      uses: peter-evans/create-or-update-comment@v4
+      uses: peter-evans/create-or-update-comment@v5
       with:
         comment-id: ${{ steps.find-comment.outputs.comment-id }}
         issue-number: ${{ steps.pr-info.outputs.pr }}
diff --git a/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja b/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja
index 9ec10c2..9affe9f 100644
--- a/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja	
+++ b/python-project-template/.github/workflows/{% if include_docs %}build-documentation.yml{% endif %}.jinja	
@@ -22,7 +22,7 @@ jobs:
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python {{ py.pref(python_versions) }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version: '{{ py.pref(python_versions) }}'
     - name: Install uv