From 977af6c082eb84f59f4ba5d67d0402ecfa3a9388 Mon Sep 17 00:00:00 2001
From: Melissa Linkert <melissa@glencoesoftware.com>
Date: Thu, 15 Jan 2026 10:10:04 -0600
Subject: [PATCH 1/2] Update to Bio-Formats 8.3.0

Includes updates to other OME dependencies as indicated in https://www.openmicroscopy.org/2026/01/15/bio-formats-8-4-0.html
---
 pom.xml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pom.xml b/pom.xml
index 1953c5a..55d5e22 100644
--- a/pom.xml
+++ b/pom.xml
@@ -1279,23 +1279,23 @@
 		<com.zeroc.ice.version>${ice.version}</com.zeroc.ice.version>
 
 		<!-- OME Codecs - https://github.com/ome/ome-codecs -->
-		<ome-codecs.version>1.1.1</ome-codecs.version>
+		<ome-codecs.version>1.1.2</ome-codecs.version>
 		<org.openmicroscopy.ome-codecs.version>${ome-codecs.version}</org.openmicroscopy.ome-codecs.version>
 
 		<!-- OME Common Java - https://github.com/ome/ome-common-java -->
-		<ome-common.version>6.1.0</ome-common.version>
+		<ome-common.version>6.1.2</ome-common.version>
 		<org.openmicroscopy.ome-common.version>${ome-common.version}</org.openmicroscopy.ome-common.version>
 
 		<!-- Metakit - https://github.com/ome/ome-metakit -->
-		<metakit.version>5.3.9</metakit.version>
+		<metakit.version>5.3.10</metakit.version>
 		<org.openmicroscopy.metakit.version>${metakit.version}</org.openmicroscopy.metakit.version>
 
 		<!-- OME POI - https://github.com/ome/ome-poi -->
-		<ome-poi.version>5.3.10</ome-poi.version>
+		<ome-poi.version>5.3.11</ome-poi.version>
 		<org.openmicroscopy.ome-poi.version>${ome-poi.version}</org.openmicroscopy.ome-poi.version>
 
 		<!-- OME Model - https://github.com/ome/ome-model -->
-		<ome-model.version>6.5.0</ome-model.version>
+		<ome-model.version>6.5.1</ome-model.version>
 		<ome-xml.version>${ome-model.version}</ome-xml.version>
 		<specification.version>${ome-model.version}</specification.version>
 		<org.openmicroscopy.ome-xml.version>${ome-xml.version}</org.openmicroscopy.ome-xml.version>
@@ -1307,7 +1307,7 @@
 		<ome.jxrlib-all.version>${jxrlib-all.version}</ome.jxrlib-all.version>
 
 		<!-- Bio-Formats - https://github.com/ome/bioformats -->
-		<bio-formats.version>8.3.0</bio-formats.version>
+		<bio-formats.version>8.4.0</bio-formats.version>
 		<bio-formats-tools.version>${bio-formats.version}</bio-formats-tools.version>
 		<bio-formats_plugins.version>${bio-formats.version}</bio-formats_plugins.version>
 		<formats-api.version>${bio-formats.version}</formats-api.version>

From 4969ad91c6f7e5e0c2b2a63a45574cb369cacdfb Mon Sep 17 00:00:00 2001
From: Melissa Linkert <melissa@glencoesoftware.com>
Date: Thu, 15 Jan 2026 10:14:21 -0600
Subject: [PATCH 2/2] Update logback to 1.3.16

Bio-Formats 8.4.0 uses logback 1.3.16, motivated by https://github.com/qos-ch/logback/issues/974
---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 55d5e22..a5e3c48 100644
--- a/pom.xml
+++ b/pom.xml
@@ -2295,7 +2295,7 @@
 
 		<!-- Logback - https://logback.qos.ch/ -->
 		<!-- NB: 1.3.x is the last version with Java 8 support. -->
-		<logback.version>1.3.15</logback.version>
+		<logback.version>1.3.16</logback.version>
 		<logback-classic.version>${logback.version}</logback-classic.version>
 		<logback-core.version>${logback.version}</logback-core.version>
 		<ch.qos.logback.logback-classic.version>${logback-classic.version}</ch.qos.logback.logback-classic.version>