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Description
Dear spatialdata devs,
somehow i am running into this silly thing from a fresh install with demo dataset.
Reproduce using the mouse data liver .zarr demo dataset 01_test.ipynb
Describe the bug
sdata['raw_image'] runs into ImportError:
ImportError: Dask diagnostics requirements are not installed.
Please either conda or pip install as follows:
conda install dask # either conda install
python -m pip install "dask[diagnostics]" --upgrade # or python -m pip install! uv pip install "dask[diagnostics]" --upgrade and restarting kernel leads to:
---------------------------------------------------------------------------
NotImplementedError Traceback (most recent call last)
Cell In[1], line 1
----> 1 import spatialdata as sd
File ~/Jose_BI/2_Infrastructure/PY08_SpatialData/.venv/lib/python3.13/site-packages/spatialdata/__init__.py:4
1 import dask
3 dask.config.set({"dataframe.query-planning": False})
----> 4 import dask.dataframe as dd
6 # Setting `dataframe.query-planning` to False is effective only if run before `dask.dataframe` is initialized. In
7 # the case in which the user had initilized `dask.dataframe` before, we would have DASK_EXPER_ENABLED set to `True`.
8 # Here we check that this does not happen.
9 if hasattr(dd, "DASK_EXPR_ENABLED") and dd.DASK_EXPR_ENABLED:
File ~/Jose_BI/2_Infrastructure/PY08_SpatialData/.venv/lib/python3.13/site-packages/dask/dataframe/__init__.py:14
9 raise NotImplementedError("The legacy implementation is no longer supported")
11 return True
---> 14 _dask_expr_enabled()
17 import dask.array._array_expr._backends # Import this to register array dispatch
19 # Ensure that dtypes are registered
File ~/Jose_BI/2_Infrastructure/PY08_SpatialData/.venv/lib/python3.13/site-packages/dask/dataframe/__init__.py:9, in _dask_expr_enabled()
7 use_dask_expr = dask.config.get("dataframe.query-planning")
8 if use_dask_expr is False:
----> 9 raise NotImplementedError("The legacy implementation is no longer supported")
11 return True
NotImplementedError: The legacy implementation is no longer supportedTo Reproduce
- fresh spatialdata install
- load .zarr demo data
- inspect
raw_image
Expected behavior
normal inspection of raw image element
Screenshots
see notebook
Desktop (optional):
- OS: macOS
- Version 15.4
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