EDIT: This issue started as "Filtered log-graph loses some valid merge-lines" which was a mistake on my part. However, it was soon discovered that my per-repo/worktree settings had been changed unexpectedly on restart of SourceGit, so this issue is now re-opened to handle that problem.
(Old Description below...)
Even though two related branches are both included in the "Visibility in Graph" filter, merge-lines between them are not drawn.
See example here, where I've added the missing (but expected) merge connections in green:

(NOTE: I've confirmed that the SHA from the 2nd parent of these two '+' merge-points match the SHA of the indicated commit on the opposite branch.)