chore(deps): update dev-dependencies #122
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This PR contains the following updates:
^2.2.6->^2.3.1^0.11.12->^0.12.1Release Notes
numpy/numpy (numpy)
v2.3.1Compare Source
v2.3.0: (June 7, 2025)Compare Source
NumPy 2.3.0 Release Notes
The NumPy 2.3.0 release continues the work to improve free threaded
Python support and annotations together with the usual set of bug fixes.
It is unusual in the number of expired deprecations, code
modernizations, and style cleanups. The latter may not be visible to
users, but is important for code maintenance over the long term. Note
that we have also upgraded from manylinux2014 to manylinux_2_28.
Users running on a Mac having an M4 cpu might see various warnings about
invalid values and such. The warnings are a known problem with
Accelerate. They are annoying, but otherwise harmless. Apple promises to
fix them.
This release supports Python versions 3.11-3.13, Python 3.14 will be
supported when it is released.
Highlights
New functions
New function
numpy.strings.sliceThe new function
numpy.strings.slicewas added, which implements fastnative slicing of string arrays. It supports the full slicing API
including negative slice offsets and steps.
(gh-27789)
Deprecations
The
numpy.typing.mypy_pluginhas been deprecated in favor ofplatform-agnostic static type inference. Please remove
numpy.typing.mypy_pluginfrom thepluginssection of your mypyconfiguration. If this change results in new errors being reported,
kindly open an issue.
(gh-28129)
The
numpy.typing.NBitBasetype has been deprecated and will beremoved in a future version.
This type was previously intended to be used as a generic upper
bound for type-parameters, for example:
But in NumPy 2.2.0,
float64andcomplex128were changed toconcrete subtypes, causing static type-checkers to reject
x: np.float64 = f(np.complex128(42j)).So instead, the better approach is to use
typing.overload:(gh-28884)
Expired deprecations
Remove deprecated macros like
NPY_OWNDATAfrom Cython interfacesin favor of
NPY_ARRAY_OWNDATA(deprecated since 1.7)(gh-28254)
Remove
numpy/npy_1_7_deprecated_api.hand C macros likeNPY_OWNDATAin favor ofNPY_ARRAY_OWNDATA(deprecated since 1.7)(gh-28254)
Remove alias
generate_divbyzero_errortonpy_set_floatstatus_divbyzeroandgenerate_overflow_errortonpy_set_floatstatus_overflow(deprecated since 1.10)(gh-28254)
Remove
np.tostring(deprecated since 1.19)(gh-28254)
Raise on
np.conjugateof non-numeric types (deprecated since 1.13)(gh-28254)
Raise when using
np.bincount(...minlength=None), use 0 instead(deprecated since 1.14)
(gh-28254)
Passing
shape=Noneto functions with a non-optional shape argumenterrors, use
()instead (deprecated since 1.20)(gh-28254)
Inexact matches for
modeandsearchsideraise (deprecated since1.20)
(gh-28254)
Setting
__array_finalize__ = Noneerrors (deprecated since 1.23)(gh-28254)
np.fromfileandnp.fromstringerror on bad data, previously theywould guess (deprecated since 1.18)
(gh-28254)
datetime64andtimedelta64construction with a tuple no longeraccepts an
eventvalue, either use a two-tuple of (unit, num) or a4-tuple of (unit, num, den, 1) (deprecated since 1.14)
(gh-28254)
When constructing a
dtypefrom a class with adtypeattribute,that attribute must be a dtype-instance rather than a thing that can
be parsed as a dtype instance (deprecated in 1.19). At some point
the whole construct of using a dtype attribute will be deprecated
(see #25306)
(gh-28254)
Passing booleans as partition index errors (deprecated since 1.23)
(gh-28254)
Out-of-bounds indexes error even on empty arrays (deprecated since
1.20)
(gh-28254)
np.tostringhas been removed, usetobytesinstead (deprecatedsince 1.19)
(gh-28254)
Disallow make a non-writeable array writeable for arrays with a base
that do not own their data (deprecated since 1.17)
(gh-28254)
concatenate()withaxis=Noneusessame-kindcasting bydefault, not
unsafe(deprecated since 1.20)(gh-28254)
Unpickling a scalar with object dtype errors (deprecated since 1.20)
(gh-28254)
The binary mode of
fromstringnow errors, usefrombufferinstead(deprecated since 1.14)
(gh-28254)
Converting
np.inexactornp.floatingto a dtype errors(deprecated since 1.19)
(gh-28254)
Converting
np.complex,np.integer,np.signedinteger,np.unsignedinteger,np.genericto a dtype errors (deprecatedsince 1.19)
(gh-28254)
The Python built-in
rounderrors for complex scalars. Usenp.roundorscalar.roundinstead (deprecated since 1.19)(gh-28254)
'np.bool' scalars can no longer be interpreted as an index
(deprecated since 1.19)
(gh-28254)
Parsing an integer via a float string is no longer supported.
(deprecated since 1.23) To avoid this error you can
converters=floatkeyword argument.np.loadtxt(...).astype(np.int64)(gh-28254)
The use of a length 1 tuple for the ufunc
signatureerrors. Usedtypeor fill the tuple withNone(deprecated since 1.19)(gh-28254)
Special handling of matrix is in np.outer is removed. Convert to a
ndarray via
matrix.A(deprecated since 1.20)(gh-28254)
Removed the
np.compatpackage source code (removed in 2.0)(gh-28961)
C API changes
NpyIter_GetTransferFlagsis now available to check if the iteratorneeds the Python API or if casts may cause floating point errors
(FPE). FPEs can for example be set when casting
float64(1e300)tofloat32(overflow to infinity) or a NaN to an integer (invalidvalue).
(gh-27883)
NpyIternow has no limit on the number of operands it supports.(gh-28080)
New
NpyIter_GetTransferFlagsandNpyIter_IterationNeedsAPIchangeNumPy now has the new
NpyIter_GetTransferFlagsfunction as a moreprecise way checking of iterator/buffering needs. I.e. whether the
Python API/GIL is required or floating point errors may occur. This
function is also faster if you already know your needs without
buffering.
The
NpyIter_IterationNeedsAPIfunction now performs all the checksthat were previously performed at setup time. While it was never
necessary to call it multiple times, doing so will now have a larger
cost.
(gh-27998)
New Features
The type parameter of
np.dtypenow defaults totyping.Any. Thisway, static type-checkers will infer
dtype: np.dtypeasdtype: np.dtype[Any], without reporting an error.(gh-28669)
Static type-checkers now interpret:
_: np.ndarrayas_: npt.NDArray[typing.Any]._: np.flatiteras_: np.flatiter[np.ndarray].This is because their type parameters now have default values.
(gh-28940)
NumPy now registers its pkg-config paths with the pkgconf PyPI package
The pkgconf PyPI
package provides an interface for projects like NumPy to register their
own paths to be added to the pkg-config search path. This means that
when using pkgconf
from PyPI, NumPy will be discoverable without needing for any custom
environment configuration.
(gh-28214)
Allow
out=...in ufuncs to ensure array resultNumPy has the sometimes difficult behavior that it currently usually
returns scalars rather than 0-D arrays (even if the inputs were 0-D
arrays). This is especially problematic for non-numerical dtypes (e.g.
object).For ufuncs (i.e. most simple math functions) it is now possible to use
out=...(literally `...`, e.g.out=Ellipsis) which is identicalin behavior to
outnot being passed, but will ensure a non-scalarreturn. This spelling is borrowed from
arr1d[0, ...]where the...also ensures a non-scalar return.
Other functions with an
out=kwarg should gain support eventually.Downstream libraries that interoperate via
__array_ufunc__or__array_function__may need to adapt to support this.(gh-28576)
Building NumPy with OpenMP Parallelization
NumPy now supports OpenMP parallel processing capabilities when built
with the
-Denable_openmp=trueMeson build flag. This feature isdisabled by default. When enabled,
np.sortandnp.argsortfunctionscan utilize OpenMP for parallel thread execution, improving performance
for these operations.
(gh-28619)
Interactive examples in the NumPy documentation
The NumPy documentation includes a number of examples that can now be
run interactively in your browser using WebAssembly and Pyodide.
Please note that the examples are currently experimental in nature and
may not work as expected for all methods in the public API.
(gh-26745)
Improvements
Scalar comparisons between non-comparable dtypes such as
np.array(1) == np.array('s')now return a NumPy bool instead of aPython bool.
(gh-27288)
np.nditernow has no limit on the number of supported operands(C-integer).
(gh-28080)
No-copy pickling is now supported for any array that can be
transposed to a C-contiguous array.
(gh-28105)
The
__repr__for user-defined dtypes now prefers the__name__ofthe custom dtype over a more generic name constructed from its
kindanditemsize.(gh-28250)
np.dotnow reports floating point exceptions.(gh-28442)
np.dtypes.StringDTypeis now a generictype which
accepts a type argument for
na_objectthat defaults totyping.Never. For example,StringDType(na_object=None)returns aStringDType[None], andStringDType()returns aStringDType[typing.Never].(gh-28856)
Added warnings to
np.iscloseAdded warning messages if at least one of atol or rtol are either
np.nanornp.infwithinnp.isclose.np.seterrsettings(gh-28205)
Performance improvements and changes
Performance improvements to
np.uniquenp.uniquenow tries to use a hash table to find unique values insteadof sorting values before finding unique values. This is limited to
certain dtypes for now, and the function is now faster for those dtypes.
The function now also exposes a
sortedparameter to allow returningunique values as they were found, instead of sorting them afterwards.
(gh-26018)
Performance improvements to
np.sortandnp.argsortnp.sortandnp.argsortfunctions now can leverage OpenMP forparallel thread execution, resulting in up to 3.5x speedups on x86
architectures with AVX2 or AVX-512 instructions. This opt-in feature
requires NumPy to be built with the -Denable_openmp Meson flag. Users
can control the number of threads used by setting the OMP_NUM_THREADS
environment variable.
(gh-28619)
Performance improvements for
np.float16castsEarlier, floating point casts to and from
np.float16types wereemulated in software on all platforms.
Now, on ARM devices that support Neon float16 intrinsics (such as recent
Apple Silicon), the native float16 path is used to achieve the best
performance.
(gh-28769)
Changes
The vector norm
ord=infand the matrix normsord={1, 2, inf, 'nuc'}now always returns zero for empty arrays.Empty arrays have at least one axis of size zero. This affects
np.linalg.norm,np.linalg.vector_norm, andnp.linalg.matrix_norm. Previously, NumPy would raises errors orreturn zero depending on the shape of the array.
(gh-28343)
A spelling error in the error message returned when converting a
string to a float with the method
np.format_float_positionalhasbeen fixed.
(gh-28569)
NumPy's
__array_api_version__was upgraded from2023.12to2024.12.numpy.count_nonzeroforaxis=None(default) now returns a NumPyscalar instead of a Python integer.
The parameter
axisinnumpy.take_along_axisfunction has now adefault value of
-1.(gh-28615)
Printing of
np.float16andnp.float32scalars and arrays havebeen improved by adjusting the transition to scientific notation
based on the floating point precision. A new legacy
np.printoptionsmode'2.2'has been added for backwardscompatibility.
(gh-28703)
Multiplication between a string and integer now raises OverflowError
instead of MemoryError if the result of the multiplication would
create a string that is too large to be represented. This follows
Python's behavior.
(gh-29060)
unique_valuesmay return unsorted dataThe relatively new function (added in NumPy 2.0)
unique_valuesmay nowreturn unsorted results. Just as
unique_countsandunique_allthesenever guaranteed a sorted result, however, the result was sorted until
now. In cases where these do return a sorted result, this may change in
future releases to improve performance.
(gh-26018)
Changes to the main iterator and potential numerical changes
The main iterator, used in math functions and via
np.nditerfromPython and
NpyIterin C, now behaves differently for some bufferediterations. This means that:
sized allowed by the
buffersizeparameter.no operand requires buffering.
For
np.sum()such changes in buffersize may slightly change numericalresults of floating point operations. Users who use "growinner" for
custom reductions could notice changes in precision (for example, in
NumPy we removed it from
einsumto avoid most precision changes andimprove precision for some 64bit floating point inputs).
(gh-27883)
The minimum supported GCC version is now 9.3.0
The minimum supported version was updated from 8.4.0 to 9.3.0, primarily
in order to reduce the chance of platform-specific bugs in old GCC
versions from causing issues.
(gh-28102)
Changes to automatic bin selection in numpy.histogram
The automatic bin selection algorithm in
numpy.histogramhas beenmodified to avoid out-of-memory errors for samples with low variation.
For full control over the selected bins the user can use set the
binor
rangeparameters ofnumpy.histogram.(gh-28426)
Build manylinux_2_28 wheels
Wheels for linux systems will use the
manylinux_2_28tag (instead ofthe
manylinux2014tag), which means dropping support forredhat7/centos7, amazonlinux2, debian9, ubuntu18.04, and other
pre-glibc2.28 operating system versions, as per the PEP 600 support
table.
(gh-28436)
Remove use of -Wl,-ld_classic on macOS
Remove use of -Wl,-ld_classic on macOS. This hack is no longer needed by
Spack, and results in libraries that cannot link to other libraries
built with ld (new).
(gh-28713)
Re-enable overriding functions in the
numpy.stringsRe-enable overriding functions in the
numpy.stringsmodule.(gh-28741)
Checksums
MD5
SHA256
astral-sh/ruff (ruff)
v0.12.1Compare Source
Preview features
flake8-errmsg] ExtendEM101to support byte strings (#18867)flake8-use-pathlib] Add autofix forPTH202(#18763)pygrep-hooks] AddAsyncMockmethods toinvalid-mock-access(PGH005) (#18547)pylint] Ignore__init__.pyfiles in (PLC0414) (#18400)ruff] TriggerRUF037for empty string and byte strings (#18862).pyifiles (#18888)Bug fixes
remove_argument(#18805)flake8-logging] Avoid false positive forexc_info=Trueoutsidelogger.exception(LOG014) (#18737)flake8-pytest-style] Enforcepytestimport for decorators (#18779)flake8-pytest-style] Mark autofix forPT001andPT023as unsafe if there's comments in the decorator (#18792)flake8-pytest-style]PT001/PT023fix makes syntax error on parenthesized decorator (#18782)flake8-raise] Make fix unsafe if it deletes comments (RSE102) (#18788)flake8-simplify] FixSIM911autofix creating a syntax error (#18793)flake8-simplify] Fix false negatives for shadowed bindings (SIM910,SIM911) (#18794)flake8-simplify] Preserve original behavior forexcept ()and bareexcept(SIM105) (#18213)flake8-pyi] FixPYI041's fix causingTypeErrorwithNone | None | ...(#18637)perflint] FixPERF101autofix creating a syntax error and mark autofix as unsafe if there are comments in thelistcall expr (#18803)perflint] Fix false negative inPERF401(#18866)pylint] Avoid flattening nestedmin/maxwhen outer call has single argument (PLW3301) (#16885)pylint] FixPLC2801autofix creating a syntax error (#18857)pylint] MarkPLE0241autofix as unsafe if there's comments in the base classes (#18832)pylint] SuppressPLE2510/PLE2512/PLE2513/PLE2514/PLE2515autofix if the text contains an odd number of backslashes (#18856)refurb] Detect more exotic float literals inFURB164(#18925)refurb] FixFURB163autofix creating a syntax error foryieldexpressions (#18756)refurb] MarkFURB129autofix as unsafe if there's comments in thereadlinescall (#18858)ruff] Fix false positives and negatives inRUF010(#18690)analyze.directionvariant names (#18892)Rule changes
flake8-return] MarkRET501fix unsafe if comments are inside (#18780)flake8-async] Fix detection for large integer sleep durations inASYNC116rule (#18767)flake8-async] Mark autofix forASYNC115as unsafe if the call expression contains comments (#18753)flake8-bugbear] Mark autofix forB004as unsafe if thehasattrcall expr contains comments (#18755)flake8-comprehension] Mark autofix forC420as unsafe if there's comments inside the dict comprehension (#18768)flake8-comprehensions] Handle template strings for comprehension fixes (#18710)flake8-future-annotations] Add autofix (FA100) (#18903)pyflakes] MarkF504/F522/F523autofix as unsafe if there's a call with side effect (#18839)pylint] Allow fix with comments and document performance implications (PLW3301) (#18936)pylint] Detect more exoticNaNliterals inPLW0177(#18630)pylint] FixPLC1802autofix creating a syntax error and mark autofix as unsafe if there's comments in thelencall (#18836)pyupgrade] Extend version detection to includesys.version_info.major(UP036) (#18633)ruff] Add lint ruleRUF064for callingchmodwith non-octal integers (#18541)ruff] Addedcls.__dict__.get('__annotations__')check (RUF063) (#18233)ruff] Frozendataclassdefault should be valid (RUF009) (#18735)Server
Documentation
perflint] Small docs improvement toPERF401(#18786)pyupgrade]: Usesuper(), not__super__in error messages (UP008) (#18743)flake8-pie] Small docs fix toPIE794(#18829)flake8-pyi] Correctcollections-named-tupleexample to use PascalCase assignment (#16884)flake8-pie] Add note on type checking benefits tounnecessary-dict-kwargs(PIE804) (#18666)pycodestyle] Clarify PEP 8 relationship towhitespace-around-operatorrules (#18870)Other changes
flake8-logging] Add fix safety section toLOG002(#18840)pyupgrade] Add fix safety section toUP010(#18838)v0.12.0Compare Source
Check out the blog post for a migration
guide and overview of the changes!
Breaking changes
Detection of more syntax errors
Ruff now detects version-related syntax errors, such as the use of the
matchstatement on Python versions before 3.10, and syntax errors emitted by
CPython's compiler, such as irrefutable
matchpatterns before the finalcasearm.New default Python version handling for syntax errors
Ruff will default to the latest supported Python version (3.13) when
checking for the version-related syntax errors mentioned above to prevent
false positives in projects without a Python version configured. The default
in all other cases, like applying lint rules, is unchanged and remains at the
minimum supported Python version (3.9).
Updated f-string formatting
Ruff now formats multi-line f-strings with format specifiers to avoid adding a
line break after the format specifier. This addresses a change to the Python
grammar in version 3.13.4 that made such a line break a syntax error.
rust-toolchain.tomlis no longer included in source distributionsThe
rust-toolchain.tomlis used to specify a higher Rust version than Ruff'sminimum supported Rust version (MSRV) for development and building release
artifacts. However, when present in source distributions, it would also cause
downstream package maintainers to pull in the same Rust toolchain, even if
their available toolchain was MSRV-compatible.
Removed Rules
The following rules have been removed:
suspicious-xmle-tree-usage(
S320)Deprecated Rules
The following rules have been deprecated:
pandas-df-variable-nameStabilization
The following rules have been stabilized and are no longer in preview:
for-loop-writes(FURB122)check-and-remove-from-set(FURB132)verbose-decimal-constructor(FURB157)fromisoformat-replace-z(FURB162)int-on-sliced-str(FURB166)exc-info-outside-except-handler(LOG014)import-outside-top-level(PLC0415)unnecessary-dict-index-lookup(PLR1733)nan-comparison(PLW0177)eq-without-hash(PLW1641)pytest-parameter-with-default-argument(PT028)pytest-warns-too-broad(PT030)pytest-warns-with-multiple-statements(PT031)invalid-formatter-suppression-comment(RUF028)dataclass-enum(RUF049)class-with-mixed-type-vars(RUF053)unnecessary-round(RUF057)starmap-zip(RUF058)non-pep604-annotation-optional(UP045)non-pep695-generic-class(UP046)non-pep695-generic-function(UP047)private-type-parameter(UP049)The following behaviors have been stabilized:
collection-literal-concatenation] (RUF005) now recognizes slices, inaddition to list literals and variables.
readlines-in-for] (FURB129) is now marked as always safe.if-else-block-instead-of-if-exp] (SIM108) will now further simplifyexpressions to use
orinstead of anifexpression, where possible.unused-noqa] (RUF100) now checks for file-levelnoqacomments as wellas inline comments.
subprocess-without-shell-equals-true] (S603) now accepts literal strings,as well as lists and tuples of literal strings, as trusted input.
boolean-type-hint-positional-argument] (FBT001) now applies to types thatinclude
bool, likebool | intortyping.Optional[bool], in addition toplain
boolannotations.non-pep604-annotation-union] (UP007) has now been split into two rules.UP007now applies only totyping.Union, while[
non-pep604-annotation-optional] (UP045) checks for use oftyping.Optional.UP045has also been stabilized in this release, but youmay need to update existing
include,ignore, ornoqasettings toaccommodate this change.
Preview features
ruff] Check for non-context-manager use ofpytest.raises,pytest.warns, andpytest.deprecated_call(RUF061) (#17368)Bug fixes
readlines(#18542)\rand\r\nhandling in t- and f-string debug texts (#18673)}when f-string expression has a format specifier (#18704)flake8-pyi] Avoid syntax error in the case of starred and keyword arguments (PYI059) (#18611)flake8-return] FixRET504autofix generating a syntax error (#18428)pep8-naming] Suppress fix forN804andN805if the recommended name is already used (#18472)pycodestyle] Avoid causing a syntax error in expressions spanning multiple lines (E731) (#18479)pyupgrade] SuppressUP008ifsuperis shadowed (#18688)refurb] Parenthesize lambda and ternary expressions (FURB122,FURB142) (#18592)ruff] Handle extra arguments todeque(RUF037) (#18614)ruff] Preserve parentheses arounddequein fix forunnecessary-empty-iterable-within-deque-call(RUF037) (#18598)ruff] Validate arguments before offering a fix (RUF056) (#18631)ruff] Skip fix forRUF059if dummy name is already bound (#18509)pylint] FixPLW0128to check assignment targets in square brackets and after asterisks (#18665)Rule changes
returnstatements (B909) (#18408)ty:comments as pragma comments (#18532)flake8-pyi] Applycustom-typevar-for-selfto string annotations (PYI019) (#18311)pyupgrade] Don't offer a fix forOptional[None](UP007,UP045)(#18545)pyupgrade] Fixsuper(__class__, self)detection (UP008) (#18478)refurb] Make the fix forFURB163unsafe forlog2,log10,*args, and deleted comments (#18645)Server
Documentation
*from glob pattern example forper-file-target-version(#18709)pylint] De-emphasize__hash__ = Parent.__hash__(PLW1641) (#18613)refurb] Add a note about float literal handling (FURB157) (#18615)v0.11.13Compare Source
Preview features
airflow] Add unsafe fix for module moved cases (AIR301,AIR311,AIR312,AIR302) (#18367,#18366,#18363,#18093)refurb] Add coverage ofsetandfrozensetcalls (FURB171) (#18035)refurb] MarkFURB180fix unsafe when class has bases (#18149)Bug fixes
perflint] Fix missing parentheses for lambda and ternary conditions (PERF401,PERF403) (#18412)pyupgrade] ApplyUP035only on py313+ forget_type_hints()(#18476)pyupgrade] Make fix unsafe if it deletes comments (UP004,UP050) (#18393, #18390)Rule changes
fastapi] Avoid false positive for class dependencies (FAST003) (#18271)Documentation
Other changes
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