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refactor: adopt _src pattern and migrate core components #763

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100fddf
refactor: adopt `_src` pattern and migrate core components
adendek Jan 18, 2026
e5c6147
Fix formatting and failing UT
adendek Jan 19, 2026
ad8641a
Add error suppression logic fot test
adendek Jan 20, 2026
3bb8a91
Fix missing imports
adendek Jan 20, 2026
4f9f12c
Fix missing imports
adendek Jan 20, 2026
cc24bb3
Merge branch 'test_workflow' of https://github.com/adendek/PINA into …
adendek Jan 20, 2026
9a70520
Update documentation
adendek Jan 21, 2026
f6c680f
Merge pull request #2 from adendek/test_workflow
adendek Jan 21, 2026
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2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveActivationFunctionInterface.rst
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Expand Up @@ -3,6 +3,6 @@ AdaptiveActivationFunctionInterface

.. currentmodule:: pina.adaptive_function.adaptive_function_interface

.. automodule:: pina.adaptive_function.adaptive_function_interface
.. automodule:: pina._src.adaptive_function.adaptive_function_interface
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/adaptive_function/AdaptiveCELU.rst
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@@ -1,9 +1,9 @@
AdaptiveCELU
============

.. currentmodule:: pina.adaptive_function.adaptive_function
.. currentmodule:: pina.adaptive_function

.. autoclass:: AdaptiveCELU
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveCELU
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveELU.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveELU

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveELU
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveELU
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveExp.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveExp

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveExp
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveExp
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveGELU.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveGELU

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveGELU
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveGELU
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveMish.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveMish

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveMish
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveMish
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveReLU.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveReLU

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveReLU
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveReLU
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveSIREN.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveSIREN

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveSIREN
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveSIREN
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveSiLU.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveSiLU

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveSiLU
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveSiLU
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveSigmoid.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveSigmoid

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveSigmoid
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveSigmoid
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveSoftmax.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveSoftmax

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveSoftmax
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveSoftmax
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveSoftmin.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveSoftmin

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveSoftmin
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveSoftmin
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 1 addition & 1 deletion docs/source/_rst/adaptive_function/AdaptiveTanh.rst
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Expand Up @@ -3,7 +3,7 @@ AdaptiveTanh

.. currentmodule:: pina.adaptive_function.adaptive_function

.. autoclass:: AdaptiveTanh
.. autoclass:: pina._src.adaptive_function.adaptive_function.AdaptiveTanh
:members:
:show-inheritance:
:inherited-members: AdaptiveActivationFunctionInterface
2 changes: 2 additions & 0 deletions docs/source/_rst/callback/optim/switch_optimizer.rst
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Expand Up @@ -2,6 +2,8 @@ Switch Optimizer
=====================

.. currentmodule:: pina.callback.optim.switch_optimizer
.. automodule:: pina._src.callback.optim.switch_optimizer
:show-inheritance:
.. autoclass:: SwitchOptimizer
:members:
:show-inheritance:
2 changes: 2 additions & 0 deletions docs/source/_rst/callback/optim/switch_scheduler.rst
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Expand Up @@ -2,6 +2,8 @@ Switch Scheduler
=====================

.. currentmodule:: pina.callback.optim.switch_scheduler
.. automodule:: pina._src.callback.optim.switch_scheduler
:show-inheritance:
.. autoclass:: SwitchScheduler
:members:
:show-inheritance:
3 changes: 2 additions & 1 deletion docs/source/_rst/callback/processing/metric_tracker.rst
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Metric Tracker
==================
.. currentmodule:: pina.callback.processing.metric_tracker

.. automodule:: pina._src.callback.processing.metric_tracker
:show-inheritance:
.. autoclass:: MetricTracker
:members:
:show-inheritance:
2 changes: 2 additions & 0 deletions docs/source/_rst/callback/processing/normalizer_data_callback.rst
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Expand Up @@ -2,6 +2,8 @@ Normalizer Data
=======================

.. currentmodule:: pina.callback.processing.normalizer_data_callback
.. automodule:: pina._src.callback.processing.normalizer_data_callback
:show-inheritance:
.. autoclass:: NormalizerDataCallback
:members:
:show-inheritance:
3 changes: 2 additions & 1 deletion docs/source/_rst/callback/processing/pina_progress_bar.rst
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@@ -1,7 +1,8 @@
PINA Progress Bar
==================
.. currentmodule:: pina.callback.processing.pina_progress_bar

.. automodule:: pina._src.callback.processing.pina_progress_bar
:show-inheritance:
.. autoclass:: PINAProgressBar
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/callback/refinement/r3_refinement.rst
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Refinments callbacks
=======================

.. currentmodule:: pina.callback.refinement
.. autoclass:: R3Refinement
.. currentmodule:: pina.callback
.. autoclass:: pina._src.callback.refinement.r3_refinement.R3Refinement
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/callback/refinement/refinement_interface.rst
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Refinement Interface
=======================

.. currentmodule:: pina.callback.refinement
.. autoclass:: RefinementInterface
.. currentmodule:: pina.callback
.. autoclass:: pina._src.callback.refinement.refinement_interface.RefinementInterface
:members:
:show-inheritance:
2 changes: 1 addition & 1 deletion docs/source/_rst/condition/condition.rst
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Expand Up @@ -2,6 +2,6 @@ Conditions
=============
.. currentmodule:: pina.condition.condition

.. autoclass:: Condition
.. autoclass:: pina._src.condition.condition.Condition
:members:
:show-inheritance:
2 changes: 1 addition & 1 deletion docs/source/_rst/condition/condition_interface.rst
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Expand Up @@ -2,6 +2,6 @@ ConditionInterface
======================
.. currentmodule:: pina.condition.condition_interface

.. autoclass:: ConditionInterface
.. autoclass:: pina._src.condition.condition_interface.ConditionInterface
:members:
:show-inheritance:
6 changes: 3 additions & 3 deletions docs/source/_rst/condition/data_condition.rst
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Expand Up @@ -2,14 +2,14 @@ Data Conditions
==================
.. currentmodule:: pina.condition.data_condition

.. autoclass:: DataCondition
.. autoclass:: pina._src.condition.data_condition.DataCondition
:members:
:show-inheritance:

.. autoclass:: GraphDataCondition
.. autoclass:: pina._src.condition.data_condition.GraphDataCondition
:members:
:show-inheritance:

.. autoclass:: TensorDataCondition
.. autoclass:: pina._src.condition.data_condition.TensorDataCondition
:members:
:show-inheritance:
2 changes: 1 addition & 1 deletion docs/source/_rst/condition/domain_equation_condition.rst
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Expand Up @@ -2,6 +2,6 @@ Domain Equation Condition
===========================
.. currentmodule:: pina.condition.domain_equation_condition

.. autoclass:: DomainEquationCondition
.. autoclass:: pina._src.condition.domain_equation_condition.DomainEquationCondition
:members:
:show-inheritance:
6 changes: 3 additions & 3 deletions docs/source/_rst/condition/input_equation_condition.rst
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Expand Up @@ -2,14 +2,14 @@ Input Equation Condition
===========================
.. currentmodule:: pina.condition.input_equation_condition

.. autoclass:: InputEquationCondition
.. autoclass:: pina._src.condition.input_equation_condition.InputEquationCondition
:members:
:show-inheritance:

.. autoclass:: InputTensorEquationCondition
.. autoclass:: pina._src.condition.input_equation_condition.InputTensorEquationCondition
:members:
:show-inheritance:

.. autoclass:: InputGraphEquationCondition
.. autoclass:: pina._src.condition.input_equation_condition.InputGraphEquationCondition
:members:
:show-inheritance:
10 changes: 5 additions & 5 deletions docs/source/_rst/condition/input_target_condition.rst
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Expand Up @@ -2,22 +2,22 @@ Input Target Condition
===========================
.. currentmodule:: pina.condition.input_target_condition

.. autoclass:: InputTargetCondition
.. autoclass:: pina._src.condition.input_target_condition.InputTargetCondition
:members:
:show-inheritance:

.. autoclass:: TensorInputTensorTargetCondition
.. autoclass:: pina._src.condition.input_target_condition.TensorInputTensorTargetCondition
:members:
:show-inheritance:

.. autoclass:: TensorInputGraphTargetCondition
.. autoclass:: pina._src.condition.input_target_condition.TensorInputGraphTargetCondition
:members:
:show-inheritance:

.. autoclass:: GraphInputTensorTargetCondition
.. autoclass:: pina._src.condition.input_target_condition.GraphInputTensorTargetCondition
:members:
:show-inheritance:

.. autoclass:: GraphInputGraphTargetCondition
.. autoclass:: pina._src.condition.input_target_condition.GraphInputGraphTargetCondition
:members:
:show-inheritance:
6 changes: 3 additions & 3 deletions docs/source/_rst/data/data_module.rst
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Expand Up @@ -2,14 +2,14 @@ DataModule
======================
.. currentmodule:: pina.data.data_module

.. autoclass:: Collator
.. autoclass:: pina._src.data.data_module.Collator
:members:
:show-inheritance:

.. autoclass:: PinaDataModule
.. autoclass:: pina._src.data.data_module.PinaDataModule
:members:
:show-inheritance:

.. autoclass:: PinaSampler
.. autoclass:: pina._src.data.data_module.PinaSampler
:members:
:show-inheritance:
8 changes: 4 additions & 4 deletions docs/source/_rst/data/dataset.rst
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Expand Up @@ -2,18 +2,18 @@ Dataset
======================
.. currentmodule:: pina.data.dataset

.. autoclass:: PinaDataset
.. autoclass:: pina._src.data.dataset.PinaDataset
:members:
:show-inheritance:

.. autoclass:: PinaDatasetFactory
.. autoclass:: pina._src.data.dataset.PinaDatasetFactory
:members:
:show-inheritance:

.. autoclass:: PinaGraphDataset
.. autoclass:: pina._src.data.dataset.PinaGraphDataset
:members:
:show-inheritance:

.. autoclass:: PinaTensorDataset
.. autoclass:: pina._src.data.dataset.PinaTensorDataset
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/domain/base_domain.rst
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Expand Up @@ -2,8 +2,8 @@ BaseDomain
===========
.. currentmodule:: pina.domain.base_domain

.. automodule:: pina.domain.base_domain
.. automodule:: pina._src.domain.base_domain

.. autoclass:: BaseDomain
.. autoclass:: pina._src.domain.base_domain.BaseDomain
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/domain/base_operation.rst
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Expand Up @@ -2,8 +2,8 @@ BaseOperation
==============
.. currentmodule:: pina.domain.base_operation

.. automodule:: pina.domain.base_operation
.. automodule:: pina._src.domain.base_operation

.. autoclass:: BaseOperation
.. autoclass:: pina._src.domain.base_operation.BaseOperation
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/domain/cartesian_domain.rst
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Expand Up @@ -2,9 +2,9 @@ CartesianDomain
======================
.. currentmodule:: pina.domain.cartesian_domain

.. automodule:: pina.domain.cartesian_domain
.. automodule:: pina._src.domain.cartesian_domain

.. autoclass:: CartesianDomain
.. autoclass:: pina._src.domain.cartesian_domain.CartesianDomain
:members:
:show-inheritance:
:noindex:
4 changes: 2 additions & 2 deletions docs/source/_rst/domain/difference.rst
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Expand Up @@ -2,8 +2,8 @@ Difference
======================
.. currentmodule:: pina.domain.difference

.. automodule:: pina.domain.difference
.. automodule:: pina._src.domain.difference

.. autoclass:: Difference
.. autoclass:: pina._src.domain.difference.Difference
:members:
:show-inheritance:
4 changes: 2 additions & 2 deletions docs/source/_rst/domain/domain_interface.rst
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Expand Up @@ -2,8 +2,8 @@ DomainInterface
================
.. currentmodule:: pina.domain.domain_interface

.. automodule:: pina.domain.domain_interface
.. automodule:: pina._src.domain.domain_interface

.. autoclass:: DomainInterface
.. autoclass:: pina._src.domain.domain_interface.DomainInterface
:members:
:show-inheritance:
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