Dev 0.1.12

.github/workflows/linter.yml

@@ -48,4 +48,3 @@ jobs:
       # - uses: stefanzweifel/git-auto-commit-action@v6
       #   with:
       #     commit_message: "style: style fixes by ruff and autoformatting by black"
-

.github/workflows/package_and_release.yml

@@ -165,4 +165,4 @@ jobs:
           --create-plugin-repo
           --github-token ${{ secrets.GITHUB_TOKEN }}
           --osgeo-username ${{ secrets.OSGEO_USER }}
-          --osgeo-password ${{ secrets.OSGEO_PASSWORD }}
+          --osgeo-password ${{ secrets.OSGEO_PASSWORD }}

.pre-commit-config.yaml

@@ -27,6 +27,19 @@ repos:
           - --target-version=py39
 
 
+# Local hook to forbid print statements in Python files (excluding tests)
+  - repo: local
+    hooks:
+    - id: forbid-print-statements
+      name: Forbid print statements
+      entry: grep -nH -E '\bprint\s*\('
+      language: system
+      types: [python]
+      exclude: 'tests/'
+      pass_filenames: true
+      description: 'Fail if print statements are found in Python files.'
+
+
 
 ci:
     autoupdate_schedule: quarterly

.release-please-manifest.json

@@ -1,4 +1,4 @@
 {
   ".": "0.0.1",
   "loopstructural": "0.1.11"
-}
+}

docs/usage/3d-modeling.md

@@ -25,6 +25,3 @@ In LoopStructural stratigraphic surfaces can be modelled using implicit function
 
 ### Fault modelling
 Faults are modelled in LoopStructural by building three implicit functions defining the fault surface, fault slip vector and the fault extent. Combined with a parametric representation of the fault displacement within these coordinates a kinematic model.
-
-
-

docs/usage/install/linux.md

@@ -40,4 +40,4 @@
 1. Restart QGIS if necessary.
 2. Confirm that the plugin is available under the **Plugins** menu.
 
-You are now ready to use the plugin on your Linux system!
+You are now ready to use the plugin on your Linux system!

docs/usage/install/macosx.md

@@ -12,7 +12,7 @@
    ```bash
    brew install qgis
    ```
-   
+
 ### Step 2: Install Dependencies Using pip
 1. Ensure you have `pip` installed. If not, install it using:
    ```bash
@@ -33,4 +33,4 @@
 1. Restart QGIS if necessary.
 2. Confirm that the plugin is available under the **Plugins** menu.
 
-You are now ready to use the plugin on your MacOS system!
+You are now ready to use the plugin on your MacOS system!

docs/usage/installation.md

@@ -4,12 +4,12 @@
 
 This plugin is published on the official QGIS plugins repository: <https://plugins.qgis.org/plugins/loopstructural/>.
 
-LoopStructural plugin requires the installation of `LoopStructural, loopsolver, pyvista, pyvistaqt and pyqtgraph`. Optionally meshio and geoh5py can also be installed for exporting surfaces/models into different formats. 
+LoopStructural plugin requires the installation of `LoopStructural, loopsolver, pyvista, pyvistaqt and pyqtgraph`. Optionally meshio and geoh5py can also be installed for exporting surfaces/models into different formats.
 
 To install these dependencies you can follow the instructions below for your operating system.
 
 ### Using QPIP
-You can also use the experimental QGIS plugin QPIP which is developed by OPENGIS.ch <https://plugins.qgis.org/plugins/qpip/> that manages the Python dependencies for your QGIS environment and keeps the dependencies up to date. 
+You can also use the experimental QGIS plugin QPIP which is developed by OPENGIS.ch <https://plugins.qgis.org/plugins/qpip/> that manages the Python dependencies for your QGIS environment and keeps the dependencies up to date.
 
 
 ----
@@ -23,5 +23,3 @@ install/linux
 install/macosx
 
 ```
-
-

docs/usage/interface.md

@@ -4,7 +4,7 @@
 The LoopStructural plugin interfaces with QGIS to define the model input data and parameters.
 
 ### Bounding box
-The bounding box defines the spatial extent of the model and can be either specified manually or automatically by calculating the extent from a selected layer or the current view. Not that the bounding box currently has to be axis aligned, meaning that the bounding box is defined by the minimum and maximum x, y and z coordinates. 
+The bounding box defines the spatial extent of the model and can be either specified manually or automatically by calculating the extent from a selected layer or the current view. Not that the bounding box currently has to be axis aligned, meaning that the bounding box is defined by the minimum and maximum x, y and z coordinates.
 
 
 ![Bounding Box](../static/bounding_box_widget.png)
@@ -17,22 +17,22 @@ If the points being modelled contain a Z coordinate, this can be used instead of
 ### Fault layers
 The faults trace layer is usually a line layer that contains the trace of the fault. The fault trace is used to define the location of the fault in the model. Optional attributes can be used to further constrain the model:
 - **fault name** the name of the fault to be used in the model, if this is left blank the feature ID will be used instead.
-- **Dip** the dip of the fault, if this is left blank the fault will be assumed to be vertical. 
+- **Dip** the dip of the fault, if this is left blank the fault will be assumed to be vertical.
 - **Displacement** - The maximum displacement magnitude of the fault. If this is not specified, a default value will be used.
-- **Pitch** - defines the pitch of the fault slip vector in the fault surface. If this is left blank a vertical slip vector is assumed and projected onto the fault surface. 
+- **Pitch** - defines the pitch of the fault slip vector in the fault surface. If this is left blank a vertical slip vector is assumed and projected onto the fault surface.
 
 ![Fault Layer](../static/fault_layers.png)
 ### Stratigraphy
 Two layers can be used to constrain the stratigraphy of the model:
 1. Basal contacts - this layer defines the basal contacts of the stratigraphy. The layer should contain a line layer with the contact traces. The attributes can be used to define the name of the contact.
-2. Structural data - this layer defines the structural data that is used to constrain the model. The layer should contain a point layer with the structural data. The attributes can be used to define the orientation of the data, such as dip and dip direction. 
+2. Structural data - this layer defines the structural data that is used to constrain the model. The layer should contain a point layer with the structural data. The attributes can be used to define the orientation of the data, such as dip and dip direction.
 
 ![Stratigraphic Layer](../static/stratigraphic_layer.png)
 
 ## Stratigraphic Column
 The stratigraphic column defines the order of the contacts and any unconformable relationships between them. The column is defined by a list of units - these units are ordered from oldest at the bottom to youngest at the top. Unconformities can be inserted between units to define an unconformable relationship. The thicknesses define the true thickness of each unit and are used to parameterise the interpolation. The unit names should match the names of the contacts in the basal contacts layer. Units without basal contacts can be included in the stratigraphic column but will not be constrained by any data.
 
-The stratigraphic column can be initialised from the basal contacts layer by clicking the "Initialise from Layer" button. This will create a column with the contacts in the order they are found in the layer. The column can then be edited to add unconformities or change the order of the units. To change the order of units simply drag the units in the list. To add an unconformity, click the "Add Unconformity" button and drag the unconformity the location in the column. 
+The stratigraphic column can be initialised from the basal contacts layer by clicking the "Initialise from Layer" button. This will create a column with the contacts in the order they are found in the layer. The column can then be edited to add unconformities or change the order of the units. To change the order of units simply drag the units in the list. To add an unconformity, click the "Add Unconformity" button and drag the unconformity the location in the column.
 
 
 ![Stratigraphic Column](../static/stratigraphic_column_04.png)
@@ -45,7 +45,7 @@ The fault-fault relationship table defines the interaction between faults in the
 ![Fault Topology](../static/fault_topology_hamersley.png)
 
 ## Model parameters
-Once the layers have been selected, stratigraphic column defined and the fault topology relationships set, the LoopStructural model can be initialised. 
+Once the layers have been selected, stratigraphic column defined and the fault topology relationships set, the LoopStructural model can be initialised.
 
 Initialise model will create a LoopStructural model with all of the geological features in the model. For each feature in the model the number of interpolation elements (degrees of freedom), the weighting of the regularisation, contact points and orientation weight can be changed.
 ![Model Parameters](../static/model-setup.png)